Protein Info for IAI47_11590 in Pantoea sp. MT58

Annotation: type VI secretion system baseplate subunit TssF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 623 PF05947: T6SS_TssF" amino acids 1 to 620 (620 residues), 743.2 bits, see alignment E=1.3e-227 TIGR03359: type VI secretion protein, TIGR03359 family" amino acids 5 to 623 (619 residues), 629 bits, see alignment E=5.6e-193

Best Hits

KEGG orthology group: K11896, type VI secretion system protein ImpG (inferred from 98% identity to pva:Pvag_1040)

Predicted SEED Role

"Protein ImpG/VasA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (623 amino acids)

>IAI47_11590 type VI secretion system baseplate subunit TssF (Pantoea sp. MT58)
MDSNLLDYYNRELAYLREMGAEFATRYPKVAGRLGMHGIDVADPYVERLMEGFAFLTSRV
QLKMDAEFPRFSQRLLEMIAPSYLSPTPSMAIAQLTPDSRKGDITQGFRVPRGTMMESQN
LKKTGVTCSYSTAHDVVLHPLRITEASLGGVPGDLPSGELKLTGLGAASALRIRITCEGI
SSLSQLNVEDLMLFLSGPDIQALKLLELLMQHRVGIVLQSVEKRPQRQVLTDDALQQEGF
APEQALLPDDLRNFDGYRLLQEYFAFPARFQFISLSQLGPFLRRCDNATAFDIIILLDKA
DSALESVVDHSHLALHCTPVINLFPKTAERLKVSDSQHEYHLVVDNIRPLDYEVHSVQRL
FATVEGKREEQVFRPFWSTFSGDQGDYGAYFSLRREQRTLSEQAQRYGTRTGYIGSEVFL
SLVDEHHAPWRDDVRYLSAEVMCTSRDLPLMLQQDQGNFVMPDSIPVSELKLCKGPTPPR
PALAEGLSAWRLISHLQMNYLSLMDSSDGEGAAALRQLLSLYANLAEAPVARQIDGIRHC
TLSAVNRRVPEPGPVVFARGVSITLEVDEQAFSGASPWLFGSVLERVCGRLVALNSFTEF
TLNSQQRGEVGYWPPRMGRKALI