Protein Info for IAI47_11560 in Pantoea sp. MT58

Annotation: RHS repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1472 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 226 to 247 (22 residues), see Phobius details PF05488: PAAR_motif" amino acids 156 to 200 (45 residues), 34.3 bits, see alignment (E = 4.4e-12) PF20148: DUF6531" amino acids 289 to 361 (73 residues), 65.4 bits, see alignment 9.8e-22 PF05593: RHS_repeat" amino acids 645 to 673 (29 residues), 23 bits, see alignment (E = 1.7e-08) amino acids 699 to 736 (38 residues), 33.7 bits, see alignment (E = 7.3e-12) amino acids 720 to 756 (37 residues), 36.8 bits, see alignment (E = 8e-13) amino acids 784 to 815 (32 residues), 23.8 bits, see alignment (E = 9.2e-09) TIGR01643: YD repeat (two copies)" amino acids 657 to 690 (34 residues), 21.2 bits, see alignment (E = 3.2e-08) amino acids 699 to 739 (41 residues), 23.6 bits, see alignment (E = 5.3e-09) amino acids 720 to 761 (42 residues), 27.6 bits, see alignment (E = 3e-10) PF03527: RHS" amino acids 1235 to 1272 (38 residues), 46.4 bits, see alignment (E = 5.3e-16) TIGR03696: RHS repeat-associated core domain" amino acids 1263 to 1341 (79 residues), 90.7 bits, see alignment 6.7e-30

Best Hits

KEGG orthology group: None (inferred from 70% identity to pao:Pat9b_2499)

Predicted SEED Role

"Rhs-family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1472 amino acids)

>IAI47_11560 RHS repeat protein (Pantoea sp. MT58)
MLAAGTGIGAVIGGAAIAGLIFSGKLEEIGDAAGKFVDSVIDPGPPDAIIISGSDDVLIM
GKKAARAAGTVDRGYLNMPVAQDEGIDWAGIGMLALTGVAMAMKTTLNPGAALMSVAEKA
SHITSDDIKDWGKSVWTSLTQPVVESANPYAAPMPQDKVACAKGHMVTSSNFIAQGSKKV
LINNQPAARNGDKSTCEAVIKISENPRVRIGGDTITVRDIHSGKNMLAYMAGNLLGGALA
GVLPQLIKFGYSRLILRGLAKEIICPLGGIVATEAAAQAVIKASSTAFPVNIATGAKILA
QDEDLDFVLPDRIPLRWQRIYHSRNLAAGILGTGWMLPFETRLYRLPDNQLMFRDMTGRE
LGMGKVNTGDVIDFQEEGLKLFCSPNGAMVIQHHDGEHQLYEPDPLNMGEWRLHRLYDRH
ENAQYFEWNKQGQLVRIFSDNEALDVELEYQEWGRLSAVYQVCGNTRRCMVSYRYNEQNQ
LIMVSDADNIVLRQYGWDRASDMLAWHSFSTGLKVQYQWQPALDSRHWRVSSYQVLDEQA
SVLENWRINTDEKERIAYVSNDEGVSSQHRWDMLYRITAYTDEHGGSWAFNWAGTSEQLN
EMVQPDGARWEYAFDARGNLTMERDPLERTTLKTWHPLYALPLKEVLPNGAVWQYEYNLA
GDVVSLTDPEGATTLLKWNEQGDLVERIDAHCNRHCFWWDSRGQLIREEDCSGYPARRQY
DDTGRLVSITDALGNTQRFAWSPAGRLEILTRPDGRETRFEYNKAGLLCGQSIEGILAHK
VTLNSRGQVIEAVDPAGQKTQFRFNRAGRLTTLINSNMQEWHFSYSSTGLLQQQQDYAGR
KTEYHYNALQQVESLIRYPDSSSEMPPQVTNYEYDALGRMTARETCEHRTEFRHSALALE
ICRAPYQEWRQAAIEMRDPEHAEYQIFTYNKLGRLISEKNHSGEYCHQYDALNNLSATSY
PDGQKIDFLRYGSGHLLEIQLSFNAKKLSLAGYQRDRLHRETNRTQGVLTQETYYDVAGR
ISHRRCLDNPRKTLIAERRYQWDQADQIIRQIYTDGTPSSPQEKYRQLLWGYDAAGRVTQ
SIMPGCDEQFLYDAADNQTTQDLHPVRNNMLRRLDGVRWEYDGFGRMTERHDSHRGIVQR
FFYDSEHRISDVQIEGDIEFSRAQYLYDALGRRTEKRVWRHRQEQPECTKFAWLGMQLVG
ESSTHRPDTGVRYVYAENSYEPLARIDSTGAHSDIYWYHTEINGLPDRLTDEEGKSVWRG
NFSVWGRTLSEQCNASWGVPQNLRFQGQYLDRETGLHYNTLRYYDPRGGRYTQPDPIGLK
GGLNTYTYVNDPMVWVDPLGLIPWEKGTFNSWFNGASVQDIIDNKSAVESALRSPGGMHE
MFPVSIASKAKELGFSAEELKAMTVPTSEITFINVTDRNGMPVPNGPHHGSKAGRHFHNK
LISDLKSAETKMQAIDIIETHHSIHMKRTGCF