Protein Info for IAI47_11325 in Pantoea sp. MT58

Annotation: P1 family peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 PF03576: Peptidase_S58" amino acids 32 to 334 (303 residues), 356.9 bits, see alignment E=5.7e-111

Best Hits

KEGG orthology group: K01266, D-aminopeptidase [EC: 3.4.11.19] (inferred from 95% identity to pva:Pvag_1058)

Predicted SEED Role

"macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.4.11.19

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (347 amino acids)

>IAI47_11325 P1 family peptidase (Pantoea sp. MT58)
MDYQQLQRDLLLDRWRNLRQLGQPRSACGPTNRISDVAGVRVGHYTLNEGEKQTGVTAIL
PPGDNLFLTPLPCGAEVLNGFAKPVGLVQIEELGVLQTPILLSNTLAVGTLFTALVRDAI
RCNPELGRTLPTVNPLVLECNDGWLNDIQALAISEDMAKAALQTASADFARGSVGAGRGM
SCFSLKGGIGTASRVIPSLNATLGVLVLANFGALEALTLDGVRAGEMIAPLLAGEAPQRD
AGSVIIIMATDAPLDTRQLKRIAKRAGAGLGRLGSYWGHGSGDIAVAFSTQPLPLPPQDD
TLEPLFAAAADATEQAVLDALLSAEAVTGFRGHHRPSLTQILDKLTS