Protein Info for IAI47_10845 in Pantoea sp. MT58

Annotation: major outer membrane lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 78 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF04728: LPP" amino acids 26 to 78 (53 residues), 90.2 bits, see alignment E=3.9e-30

Best Hits

Swiss-Prot: 94% identical to LPP_YERPS: Major outer membrane lipoprotein (lpp) from Yersinia pseudotuberculosis serotype I (strain IP32953)

KEGG orthology group: K06078, murein lipoprotein (inferred from 92% identity to eay:EAM_1656)

Predicted SEED Role

"major outer membrane lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (78 amino acids)

>IAI47_10845 major outer membrane lipoprotein (Pantoea sp. MT58)
MNRTKLVLGAVVLASTMLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKD
DAARANQRLDNQAHSYRK