Protein Info for IAI47_10415 in Pantoea sp. MT58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 signal peptide" amino acids 20 to 21 (2 residues), see Phobius details transmembrane" amino acids 22 to 43 (22 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 137 to 155 (19 residues), see Phobius details amino acids 175 to 195 (21 residues), see Phobius details amino acids 221 to 245 (25 residues), see Phobius details amino acids 257 to 275 (19 residues), see Phobius details amino acids 282 to 304 (23 residues), see Phobius details amino acids 311 to 330 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 57 to 321 (265 residues), 164.8 bits, see alignment E=1.2e-52

Best Hits

Swiss-Prot: 74% identical to YTFT_ECOLI: Inner membrane ABC transporter permease protein YtfT (ytfT) from Escherichia coli (strain K12)

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 97% identity to pva:Pvag_1246)

MetaCyc: 74% identical to galactofuranose ABC transporter putative membrane subunit YtfT (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-491 [EC: 7.5.2.9]; 7.5.2.9 [EC: 7.5.2.9]

Predicted SEED Role

"Putative sugar ABC transport system, permease protein YtfT"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.5.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (338 amino acids)

>IAI47_10415 ABC transporter permease (Pantoea sp. MT58)
MLESPMTSEKTPRRKLKLPPGMPQIAALLLVLLIDSLVANNFFAVHLQDGRLFGSPIDIL
NRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATAATLTVAGHGVPFIILCTLATGLA
CGLWNGVLVALLRIQPFVATLILMVAGRGIAQLITQGQIVTFDSDSLGWFGNGSLWMLPV
PVWITLVVALAVWLLTRKTALGLFIEAVGINLRAARNAGVTGWLVVMSTYAISGVCAAVA
GLIVAADIRGADANNAGLWLELDAILAVVIGGASLMGGRFNLVLSLIGALIIQSMNTGIL
LSGFPPELNQVVKAVVVMCVLLLQSPRFIAMLKRRRPT