Protein Info for IAI47_10285 in Pantoea sp. MT58

Annotation: SrfC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 788 PF10139: Virul_Fac" amino acids 27 to 436 (410 residues), 241.4 bits, see alignment E=1.1e-75 amino acids 442 to 779 (338 residues), 196 bits, see alignment E=6e-62

Best Hits

KEGG orthology group: None (inferred from 95% identity to pva:Pvag_1269)

Predicted SEED Role

"Putative virulence factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (788 amino acids)

>IAI47_10285 SrfC (Pantoea sp. MT58)
MKALKPRQPQTLAKRLSLLQDALNNSLTWIETTREQSPRLALEAETLTLQLRQARVQAQA
LAQQVARPVTLALFGQSQAGKAWLLNEMVADAQGQLVTRMGDKQLSWFQHINPGNLDFAT
ATRFSHQREPLSNEWPVELTLLSEAEIVRLMVACAGETSPDTAQIDSALQRLQRHRLATP
LAGLDGDALVTLWSWCRRRSHHDVRLDRHFWPQAVELAPWLSVDDRVQLFSLLWPAQPEL
NEMLRSLLHLRHQLRNSTRVIAPLSLLTDTSLLPAEQLIVPASEQDQQQLVEVCPLNGNR
IGKAQNVPLGLLALLTLEVLAPLSSTPRTALYDDADMLELPAPGQSGDAATQEDRQRLQQ
QDPLRAQLLAQKRALLPGLYAARQAIDLLLVCTAASHRQDVDLASETLREWQRQQPAQES
AEKPRLIWAITPFDARHQLVNVDEAVQRQMGQPGQHWGSMLALDRAGVDRMASWLQDEMQ
PEARRDLLLAQLAQIQHTVVERRLLPWTEAGASPEQAARKQNIADTLLKCLQHRTGLHGE
LLERLQPPREALRQLWLNQSALQGSKPANSQAPENQFGIGFEFDLFSESPAEAPVQPRQS
LQSAQQFPRQVLLLWLDHLRQLPENRSLLALLNVDKATMEWLVEELITAGFRTDIAQKLQ
QALHEPDSQSVSHESRADRQVTRAMTVLGDFVAWLGFLQRPESERPDSRVNRGQVIFSRP
PAPSVSFSAGQRLTKLSAAPANHTAYYIYDWLVGLNQVIIENNGYTGGGDLPLAAREALV
ALLRPLRA