Protein Info for IAI47_10280 in Pantoea sp. MT58

Annotation: virulence factor SrfB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 987 transmembrane" amino acids 413 to 428 (16 residues), see Phobius details amino acids 812 to 833 (22 residues), see Phobius details PF07520: SrfB" amino acids 1 to 984 (984 residues), 1329.8 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 97% identity to pva:Pvag_1270)

Predicted SEED Role

"SrfB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (987 amino acids)

>IAI47_10280 virulence factor SrfB (Pantoea sp. MT58)
MLAPLIDDKQKITLIENSGVQFLDFGLQLSDTPARRQFVRQTANGPLLRLKVDGNSGKFL
LYPEDGGAAEVVRPESDIALADSLTLLSACWLPLPMLRCASGRRFIGGPENWARMRLVAL
PTPDAAGNTHRVSLAFDTRCVAEPDGGEQLGLSPADAQNGVTFALAWHNYELGEFLDLTW
VDGWLRESFTDRVSDRREQAINQALREFEYQAHYLNLLELLGEQLDLSEIHIQAATLQTP
AVNVDIILDVGNSHTCGVLVEDHPEESNGLKQTYELQLRDLSEPHQVYNELFDSRLEFAE
TRFGKANFSLESGREQAFMWPSLTRVGREASRLALQRVGLEGSTGLSSPRRYLWDEARYQ
PGWRFNTPGDQAEPLAYAAPFTTLLNDEGQPLSTLAPDDRLPVFSPHYSRSSLMTFMLCE
LLAQALMQMNSAAQRQRMPQSHAPRQLRHVILTLPSAMPKPEREIFRRRMQEALALVWKA
EGWLADEDEFTPSLSRQTPKPLPDVQMEWDEATCGQMVWLFNETQVNFAGRAEDFFSSMA
RPDRPREADELPGKSLRIASIDIGGGTTDLAITQYRLDDGQGNNVKITPRLLFREGFKVA
GDDILLDVIQLWILPALQQHLQKAGLTLAEPLMNKLFGHDSRMDGQATLRQQVTLQLFIP
LAQAVLERYENWDPLESHAEINALFGELVDQPPGDAVLAFVNGEIQRELGGNSRFDLLQV
PLVVSLAQLHGEFMQHRMAIIPALRSMCEVVSLYQCDVLLLTGRPSRFPGIQALVRHLQP
LPGSRILSLEGYHTSDWYPFNKHGRIDNPKSTAAVGAMLCLLALDLRLSSFWFRAGDFEP
YSTIRYLGMLDENQALTDENLCYSEIDLDNPGYALDKKSSFRIRGNVCLGFRQLDNERWP
ASPLYSLTLNDTTLARKVAGESVLRIKLAVKAGPDASGPETLVLSDARLDDGTRVPLEQL
SLKLNTLSATGNANAQYWIDSGSVCKR