Protein Info for IAI47_10195 in Pantoea sp. MT58

Annotation: polyisoprenoid-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF04264: YceI" amino acids 29 to 191 (163 residues), 144.7 bits, see alignment E=1.4e-46

Best Hits

Swiss-Prot: 39% identical to YCEI_ECOLI: Protein YceI (yceI) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to pva:Pvag_1288)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (194 amino acids)

>IAI47_10195 polyisoprenoid-binding protein (Pantoea sp. MT58)
MKNFKRIALPLLAAATLYAPLSQAEAMHYQLNPEHTSVIVAWNHFGFSNPTADIPDATGT
LVFDKDHPEASRVDVTLPVSKIDSHVAALTKEFKGAEYFDTAKYPTATFHSTKVVAKGDN
KFDVEGNLTLKGITKPVTLHATLNKQGEHPMVKKQAIGFDATGTIKRSDFRLDKYVPAVS
DDVTLTLSTEAYAK