Protein Info for IAI47_10135 in Pantoea sp. MT58

Annotation: substrate-binding domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF13531: SBP_bac_11" amino acids 27 to 253 (227 residues), 140.5 bits, see alignment E=7.6e-45

Best Hits

Swiss-Prot: 42% identical to AIS_PSESP: Aconitate isomerase (ais) from Pseudomonas sp.

KEGG orthology group: K02020, molybdate transport system substrate-binding protein (inferred from 93% identity to pva:Pvag_1301)

Predicted SEED Role

"Hypothetical ABC transport system, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>IAI47_10135 substrate-binding domain-containing protein (Pantoea sp. MT58)
MKLKTMSLYAALLFSVAGSATAQAKELTVMISGGFKAAWDTLSPQFAKQEGITINTVAGP
SMGKTPQAIPARLARGEPADVVIMVGDALSNLQKEGATLPGSRVELADSRIGAVIKKGAT
PIKIGSESELRTALLNASSIAYSDSASGKYVSSQLFKRLGIEDQVKGKAVEVERIPVASQ
VAEGKYAIGFQQVSELLPVSGVTFIGELPDKLQYTTRFAGAVVRRSAQPDEAAKLLHWLA
SPEAQQAVHASGLHTVKASKPVKVADTVQ