Protein Info for IAI47_10005 in Pantoea sp. MT58

Annotation: sugar ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 PF00005: ABC_tran" amino acids 21 to 172 (152 residues), 105.9 bits, see alignment E=2.7e-34 amino acids 273 to 424 (152 residues), 75.7 bits, see alignment E=5.8e-25

Best Hits

Swiss-Prot: 44% identical to RBSA2_ECO57: Ribose import ATP-binding protein RbsA 2 (rbsA2) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 85% identity to pam:PANA_1874)

Predicted SEED Role

"Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (500 amino acids)

>IAI47_10005 sugar ABC transporter ATP-binding protein (Pantoea sp. MT58)
MEQFRLMMRGINKSYGNAAALQEVDFSVRPGEVHALIGENGAGKSTLLNILSGVRGADSG
EISVNGNRVQIRSPLSARQAGIAMIHQELQHVPELSVAQNMFLGRPLTRAGGWWVDKKAQ
LARATLILKTLDPTIDPDTPIRNLKVSQQQIVEIARALLDDAKIIAMDEPTSSLTPREFD
RLAELIGDLKSTGVSLIYVSHKMNEIFRVCDRATIMRDGKQVGVVNISDEDEESIVAKMV
GRKIDKLDHQAFVSEREVLRVEDLTRGNDVVAASFSVRAGEVLGIAGLVGAGRTELLKLI
AGIDRRTGGTVSVNGTAVQNHNVRAAIKAGIGLVPEDRKKEGIIKERAVKMNMALPSMHR
FTLAGLMNHARLDREALRVMGDLKLRPLDIEKTIGTLSGGNQQKVIIGRWVAADANVFLF
DEPTRGIDIGAKSEIYHLIEKLAQAGKAIVVVSSEMTEIMRISDRVLVMREGRITKELTG
SAITEENIARYAIKDIDQTA