Protein Info for IAI47_09770 in Pantoea sp. MT58
Annotation: osmoprotectant ABC transporter permease OsmW
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 84% identical to OSMW_SALTY: Osmoprotectant import permease protein OsmW (osmW) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
KEGG orthology group: K05846, osmoprotectant transport system permease protein (inferred from 100% identity to pva:Pvag_1381)Predicted SEED Role
"Putative binding-protein-dependent transport system"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (215 amino acids)
>IAI47_09770 osmoprotectant ABC transporter permease OsmW (Pantoea sp. MT58) MDTLHYIMDNWSTLLTLSWQHSWLVLVAVGLAIVIGVPLGILIVRVRWLATPILGIATVV LTIPTIALFGLMIPVFSLIGQGIGALPAITAVFLYSLLPIVRNTHTALENLPDGLREAGR GIGMTFWQRLRWVEIPMALPVIFGGIRTAVVMNVGVMAIAAVIGAGGLGQLLLDGISGSD IRMLIAGALMICLLAIFLDWLLHRLQQALTPKGIR