Protein Info for IAI47_09340 in Pantoea sp. MT58

Annotation: DUF1275 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 33 to 33 (1 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 93 to 111 (19 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 188 to 208 (21 residues), see Phobius details amino acids 214 to 232 (19 residues), see Phobius details PF06912: DUF1275" amino acids 16 to 226 (211 residues), 118.7 bits, see alignment E=1.4e-38

Best Hits

KEGG orthology group: None (inferred from 87% identity to pva:Pvag_1474)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (242 amino acids)

>IAI47_09340 DUF1275 domain-containing protein (Pantoea sp. MT58)
MLTSTHGRSNSADTRLACTLAAAAGALNTAAFEIVGFFSANMTGNVSLLSDHLAKANLGP
GLFFLSIVLLFIVGSLFSTLVINAGHRRNIRTIYAFVILLEGTALIALGVIENHFPPLSP
GVVLITSLSFLMGLQNAVVTRISNARVRTTHISGTATDIGIEMAMLFEVLRRKTSPKDAP
LYLDRLRLHTLTLLAFLAGGIAGIGLYRLLGYDFLLPVGFGLICLALNAIFTKPAKTAVV
KM