Protein Info for IAI47_09330 in Pantoea sp. MT58

Annotation: PTS transporter subunit EIIC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 528 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details transmembrane" amino acids 58 to 82 (25 residues), see Phobius details amino acids 89 to 110 (22 residues), see Phobius details amino acids 144 to 166 (23 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details amino acids 227 to 236 (10 residues), see Phobius details amino acids 260 to 274 (15 residues), see Phobius details amino acids 297 to 318 (22 residues), see Phobius details amino acids 328 to 345 (18 residues), see Phobius details amino acids 351 to 373 (23 residues), see Phobius details amino acids 379 to 397 (19 residues), see Phobius details amino acids 404 to 422 (19 residues), see Phobius details PF02378: PTS_EIIC" amino acids 12 to 368 (357 residues), 242 bits, see alignment E=8.7e-76 TIGR00826: PTS system, glucose-like IIB component" amino acids 427 to 511 (85 residues), 63.6 bits, see alignment E=8.2e-22 PF00367: PTS_EIIB" amino acids 455 to 485 (31 residues), 42.6 bits, see alignment (E = 3.3e-15)

Best Hits

KEGG orthology group: K02790, PTS system, maltose and glucose-specific IIB component [EC: 2.7.1.69] K02791, PTS system, maltose and glucose-specific IIC component (inferred from 98% identity to pva:Pvag_1476)

Predicted SEED Role

"PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)" in subsystem Maltose and Maltodextrin Utilization (EC 2.7.1.69)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.69

Use Curated BLAST to search for 2.7.1.69

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (528 amino acids)

>IAI47_09330 PTS transporter subunit EIIC (Pantoea sp. MT58)
MKQLTSQIHAFGKALMMPISVIAAAGIFLGLAAAMQNPAVTGDAFAQMQVPQIIIGFIRK
VAGALFANLPVFFAVASAIGLAKAEKPTAAFAAVIGYIVMNVGISATLAAKGITAATTTP
AALQQAGMDQTTAMMTSAEYINMLGVFTYNMSVLGGVIAGLITVALHNRFYTQQLPTAIS
FFGGRRFVPIITVVCLPLIGVLLALIWPTIGNGIAWIGQMIGKSGQYGAFLLGAFERILI
PTGLHHILNETVRFTPIGGMAVVDGQTVVGALNIFNASLTHPGSIPDETLRTATQFLAQG
KIPVMMFGLPAAALAIYHTARPEHKQRVKALVMAGALTSFTTGITEPLEFCFIFVSPVLY
LLHAFLTGLSFMLMSMLHLMIGNVQGGVIDLVVFGMLGGAKTHWWWTLVLGVIYAPIYYY
AFRLVITRMNVETPGRESEDEKPQQVTADERTQVIISGLGGQANIEDVDCCFTRLRVRVK
EMNQVVDQTLMSTGANGVNRVSEHDIQVIYGPQVEKIANEVKMALGVA