Protein Info for IAI47_08350 in Pantoea sp. MT58

Annotation: flagellar biosynthesis protein FlhA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 697 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 72 to 96 (25 residues), see Phobius details amino acids 117 to 140 (24 residues), see Phobius details amino acids 209 to 230 (22 residues), see Phobius details amino acids 251 to 269 (19 residues), see Phobius details amino acids 289 to 305 (17 residues), see Phobius details amino acids 311 to 327 (17 residues), see Phobius details TIGR01398: flagellar biosynthesis protein FlhA" amino acids 22 to 694 (673 residues), 926.4 bits, see alignment E=4.9e-283 PF00771: FHIPEP" amino acids 31 to 686 (656 residues), 892 bits, see alignment E=1.3e-272

Best Hits

Swiss-Prot: 62% identical to FLHA_BUCAP: Flagellar biosynthesis protein FlhA (flhA) from Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)

KEGG orthology group: K02400, flagellar biosynthesis protein FlhA (inferred from 89% identity to ebi:EbC_25280)

Predicted SEED Role

"Flagellar biosynthesis protein FlhA" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (697 amino acids)

>IAI47_08350 flagellar biosynthesis protein FlhA (Pantoea sp. MT58)
MANNLAVKLRLPGFKDMQWQVLAGPVLILMILSMMVLPLPPFILDLLFTFNIALSIMILL
VAMFTQRTLEFAAFPTILLFSTLLRLALNVASTRIILMEGHTGAAAAGQVVEAFGHFLVG
GNFAIGIVVFIILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDD
AKRRRAEVTQEADFYGSMDGASKFVRGDAIAGIMIMVINVIGGLLVGVVQHGMDAGHAAE
TYTLLTIGDGLVAQIPALVISTAAGVIVTRVATDQDVGEQMVTQLFKDPRVLMLSAGVIG
LLGLVPGMPNFVFLLFTAALLGLAWWLRGREAQPKKKVDVAGSISNKPADTPAATEASWT
DVQLEDTLGMEVGYRLIPMVDHQQNGELLGRIRSIRKKVAQDVGFLPPVVHIRDNMELPP
ARYRILMKGVEIGSGDAYPGRWMAINPGTAAGSLPGEATVDPAFGLAAVWIDSALKEQAQ
IQGFTVVEASTVVATHLNHLIGQFASELFGRQEAQQLLDRVTQEMPKLTEDLVPGVISLT
TLHKVLQNLLVERVSIRDMRTIIETLAEHAPVQSDPQELTSVVRVALGRAITQQWFPGND
EVQVIGLDSTLERLLLQALQGGGGLEPGLADRLLSQAQAALQRQEMLGAPPVLLVNHPLR
ALLARFLRRNLPQLVVLSNLELSDNRQIRMTATIGGK