Protein Info for IAI47_08305 in Pantoea sp. MT58

Annotation: chemotaxis protein CheW

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 PF01584: CheW" amino acids 18 to 154 (137 residues), 137.1 bits, see alignment E=1.6e-44

Best Hits

Swiss-Prot: 86% identical to CHEW_KLEAK: Chemotaxis protein CheW (cheW) from Klebsiella aerogenes (strain ATCC 13048 / DSM 30053 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006)

KEGG orthology group: K03408, purine-binding chemotaxis protein CheW (inferred from 98% identity to pva:Pvag_1726)

Predicted SEED Role

"Positive regulator of CheA protein activity (CheW)" in subsystem Bacterial Chemotaxis or Two-component regulatory systems in Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (165 amino acids)

>IAI47_08305 chemotaxis protein CheW (Pantoea sp. MT58)
MNGMATVTKIAGETVGQEFLVFTLGDEEYGIDILKVQEIRGYDQVTRIANTPDFIRGVTN
LRGVIVPIIDLRVKFAQPDVEYNENTVVIVLNLENRVVGIVVDGVSDVLSLTQDQIRPSP
EFAVTMSTEYMTGLGALGDRMLILVDIEKLLSSDEMALVDNLRSA