Protein Info for IAI47_08280 in Pantoea sp. MT58

Annotation: flagellar transcriptional regulator FlhD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 117 PF05247: FlhD" amino acids 1 to 100 (100 residues), 135.8 bits, see alignment E=2.9e-44

Best Hits

Swiss-Prot: 90% identical to FLHD_PANAM: Flagellar transcriptional regulator FlhD (flhD) from Pantoea ananatis (strain LMG 20103)

KEGG orthology group: K02403, flagellar transcriptional activator FlhD (inferred from 97% identity to pva:Pvag_1731)

Predicted SEED Role

"Flagellar transcriptional activator FlhD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (117 amino acids)

>IAI47_08280 flagellar transcriptional regulator FlhD (Pantoea sp. MT58)
MGTSEVLKHIYDLNLSYLLLAQRLINQDKASAMFRLGIDEKMANALSELTLPEMVKMAET
NQLVCQFRFTDSSSISRLTQESRVDDLQQIHTGILLSSRLLRNASKDDAPAKKRAMS