Protein Info for IAI47_08030 in Pantoea sp. MT58

Annotation: flagellar M-ring protein FliF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 575 transmembrane" amino acids 29 to 49 (21 residues), see Phobius details amino acids 473 to 489 (17 residues), see Phobius details TIGR00206: flagellar M-ring protein FliF" amino acids 11 to 574 (564 residues), 589.3 bits, see alignment E=5e-181 PF01514: YscJ_FliF" amino acids 50 to 224 (175 residues), 242.8 bits, see alignment E=2.2e-76 PF08345: YscJ_FliF_C" amino acids 256 to 449 (194 residues), 141 bits, see alignment E=4e-45

Best Hits

Swiss-Prot: 66% identical to FLIF_ECOLI: Flagellar M-ring protein (fliF) from Escherichia coli (strain K12)

KEGG orthology group: K02409, flagellar M-ring protein FliF (inferred from 96% identity to pva:Pvag_1786)

Predicted SEED Role

"Flagellar M-ring protein FliF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (575 amino acids)

>IAI47_08030 flagellar M-ring protein FliF (Pantoea sp. MT58)
MNASTAATTEQEKKGFGDLLARLRANPRIPLVIAAAAVIAIVIAMVLWAKQPSYSVLYNN
LTDEDGGAIVTQLTQMNIPYRFAENGGALMVPEANVHELRLRLAQQGLPKGGSVGFELLD
KEKFGISQFSEQVNYQRALEGELARTIESLGPVKSARVHLAMPKPTLFVREQKAPSASVT
LTLQPGRALDEGQIQAIAHMVSSSVAGLPPGNVTVVDQTGRLLTRSDSAGRDLNDAQLKY
SSEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTAEQTDEKYQPNANPSNSAIRSRQ
TSTSDQSGSPYPGGVPGALSNQPAPANTAPVTTPNNNAANGQAANGQNNAANNASQTTST
APASSGPTNSRRDDTVNYELDRTIRHTKVNVGDVQRLSVAVVVNFRADDKGKAVALNEQQ
LKQIEDLTREAMGYSQSRGDSINVVNSQFNTTEPVTTDLPFWQQQSFFDQLMDAGKWLLV
ALVAFVLYRKMVRPHLVRKQAAEKAAAEAVAARAATDQPQEEAFNVQLSKDELDQERKSN
NRMSAEVMSQRIRDMSENDPRVVALVIREWMSKEL