Protein Info for IAI47_07980 in Pantoea sp. MT58

Annotation: flagellar type III secretion system pore protein FliP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 43 to 72 (30 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 183 to 207 (25 residues), see Phobius details amino acids 219 to 241 (23 residues), see Phobius details TIGR01103: flagellar biosynthetic protein FliP" amino acids 45 to 241 (197 residues), 309.6 bits, see alignment E=4.5e-97 PF00813: FliP" amino acids 46 to 237 (192 residues), 270.1 bits, see alignment E=6.2e-85

Best Hits

Swiss-Prot: 85% identical to FLIP_ECO57: Flagellar biosynthetic protein FliP (fliP) from Escherichia coli O157:H7

KEGG orthology group: K02419, flagellar biosynthetic protein FliP (inferred from 100% identity to pva:Pvag_1796)

Predicted SEED Role

"Flagellar biosynthesis protein FliP" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (243 amino acids)

>IAI47_07980 flagellar type III secretion system pore protein FliP (Pantoea sp. MT58)
MRRLLPLLPLLLLAPVAHAQLPGLVSHSLPNGGQSWSLPVQTLVFITALTFIPAVLLMMT
SFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMAPTFDKIYQDAYLPFSQDKIS
MDVAIDKGAQPLREFMLRQTREADLALFARLANTAPIAGPEAVPMRILLPAYVTSELKTA
FQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFKLMLFVLVDGWQLLVGSLAQS
FYS