Protein Info for IAI47_07725 in Pantoea sp. MT58

Annotation: MCP four helix bundle domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 187 to 209 (23 residues), see Phobius details PF02203: TarH" amino acids 1 to 147 (147 residues), 37.2 bits, see alignment E=5.8e-13 PF12729: 4HB_MCP_1" amino acids 1 to 183 (183 residues), 65.7 bits, see alignment E=7.9e-22 PF00672: HAMP" amino acids 211 to 259 (49 residues), 25.3 bits, see alignment 3.2e-09 PF00015: MCPsignal" amino acids 330 to 477 (148 residues), 140.7 bits, see alignment E=8.8e-45

Best Hits

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (512 amino acids)

>IAI47_07725 MCP four helix bundle domain-containing protein (Pantoea sp. MT58)
MTILKKLTLVFTFTLLALLFLGIISIRSLGGAQDRFEYVATNSLPSINKISEISQLREEA
RRQILMGLLVTDKAIFEKHMVTAKEYLTKTREAMDYYKSHLITDDNDGQLISQTIQDFGV
YLEKVNKMVGVYQTGGIDAARAMVSDQGETAAASVVVSQNLKDILAYNYQVANKFAAENH
AEYLHTLWLLSSIIAAAVLMTALSSYSVLSYIRKGLQNLQSTMKTIEETLDLTLRVNLNK
KDELGATAGSFNALVTKFREVLSGVRDASKEVDTASEEIAHSNDDLSSRSESQASSLEQT
AASMNELSATVKHNMDNATEANNFIGKVQSIVNHSNRELNDLTSAINDISVSSNKVSEII
SIIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLSQRSSVAAQDIRGLIEEAI
QNVDKGVVYAANVTSRMNEALSVVDETTQLINQVNTSSKEQSYGIDQVNIAVTQMESNLQ
QNAAMVEQMSAAAGSLSQQAGRLLTEVSSFKL