Protein Info for IAI47_07710 in Pantoea sp. MT58

Annotation: BCCT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 transmembrane" amino acids 102 to 121 (20 residues), see Phobius details amino acids 155 to 175 (21 residues), see Phobius details PF02028: BCCT" amino acids 106 to 202 (97 residues), 64.3 bits, see alignment E=4e-22

Best Hits

Predicted SEED Role

"High-affinity choline uptake protein BetT" in subsystem Choline and Betaine Uptake and Betaine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (213 amino acids)

>IAI47_07710 BCCT family transporter (Pantoea sp. MT58)
MPLTSTSAPLTAELNYDAVQHADRRDVPEMGERHVDDHAIQRLVEVEVMDKPFSRGKEDL
PGYGIGACLALQHRGDRHKAGHFGGKVQRRNQHAGQYPNARFWVATTTATVATLRWMTFF
GNSAIWLIVQQGATDLPQTIVSDQTLALFNFPEHFPFSSLLSFIAMAMVAVLFVTSADSG
ASVVDTLASGGTDKPPCRYGLFKALRVDACLQQ