Protein Info for IAI47_07670 in Pantoea sp. MT58

Annotation: SDR family NAD(P)-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 transmembrane" amino acids 135 to 148 (14 residues), see Phobius details PF00106: adh_short" amino acids 9 to 191 (183 residues), 169.8 bits, see alignment E=7.6e-54 PF08659: KR" amino acids 9 to 182 (174 residues), 43.1 bits, see alignment E=6.7e-15 PF13561: adh_short_C2" amino acids 16 to 211 (196 residues), 131.4 bits, see alignment E=6.5e-42

Best Hits

Swiss-Prot: 36% identical to BOA17_BOTFB: Oxidoreductase BOA17 (BOA17) from Botryotinia fuckeliana (strain B05.10)

KEGG orthology group: None (inferred from 97% identity to pva:Pvag_1871)

Predicted SEED Role

"Short-chain dehydrogenase/reductase SDR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (280 amino acids)

>IAI47_07670 SDR family NAD(P)-dependent oxidoreductase (Pantoea sp. MT58)
MTAHSSPVWLISGCSTGFGRELAQQTIARGFKVVVTARDTASIADLVEGHDNALAVALDV
TQQLSIDQAVSAALDTFGTIDVLVNNAGYGYQSSVEEGVESEIRAQFDANVFGLFALTRA
VLPAMRKARSGHVINITSVAGLIGFASSGYYSASKHAVEGWSDSLALEAGPLGIHVTCVE
PGPFRTDWAGRSLHQTPSTLPDYAETAAARMKATSEYSGTQKGDPARAAAAMIAITEHEN
PPRHLVMGAWGHDAVTGKLKERLAEIDAWKQTSVETDFPE