Protein Info for IAI47_07615 in Pantoea sp. MT58

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 554 PF00005: ABC_tran" amino acids 33 to 191 (159 residues), 93.1 bits, see alignment E=1.4e-29 amino acids 309 to 460 (152 residues), 102.8 bits, see alignment E=1.4e-32

Best Hits

KEGG orthology group: None (inferred from 97% identity to pva:Pvag_1882)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (554 amino acids)

>IAI47_07615 ABC transporter ATP-binding protein (Pantoea sp. MT58)
MNVTPHTAMPVISVDKLRVTAQTDRGEEIDLVSDIHFTVQKGEVLALIGESGSGKTTIAM
ALMGYARSGCRIADGNIHVAGTDVNSLTPGQLRAFRGNKVAYIAQSAAASFNPGMKILDQ
VIEPVVIHGTLTRKAAKEKAIGLFRELALPNPETIGDRFPHQVSGGQLQRLMTAMALIGD
PDVVILDEPTTALDVTTQVEVLKAFRRVVVQRGVTAIYVSHDLAVVAQMADRILVLLRGK
MAEYGSTAHLIGAPKAEYTRLLMDAARQKERPSNWCPAAADIQPLLEVRDLNAGYGPRGS
DGHSKVRILEEINLKLWKGQAIGIIGESGSGKTTLAHAIAGLNAPSHGHILFNGHYIAGD
MQKRPDNELRRIQYVFQMADTALNPAHSVERILSRPLTLFHGLSGSARQQRLYQLLDLVQ
LPRNVLWRRPWALSGGQKQRVNLARALAAEPDLILCDEVTSALDTVVAAAVLDLISELRR
ELGLSVIFISHDMHAVRAVCDEIVVMKSGRIVTQLARNDYDKPTSELYFERLKRAVPELR
QGWLDEHEEILKAE