Protein Info for IAI47_07130 in Pantoea sp. MT58

Annotation: APC family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 52 to 73 (22 residues), see Phobius details amino acids 94 to 116 (23 residues), see Phobius details amino acids 128 to 146 (19 residues), see Phobius details amino acids 158 to 179 (22 residues), see Phobius details amino acids 199 to 217 (19 residues), see Phobius details amino acids 237 to 257 (21 residues), see Phobius details amino acids 280 to 307 (28 residues), see Phobius details amino acids 337 to 355 (19 residues), see Phobius details amino acids 361 to 383 (23 residues), see Phobius details amino acids 395 to 413 (19 residues), see Phobius details amino acids 420 to 438 (19 residues), see Phobius details PF00324: AA_permease" amino acids 23 to 411 (389 residues), 116.6 bits, see alignment E=1.2e-37 PF13520: AA_permease_2" amino acids 46 to 414 (369 residues), 116.9 bits, see alignment E=1.2e-37

Best Hits

Swiss-Prot: 81% identical to PLAP_ECO57: Low-affinity putrescine importer PlaP (plaP) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 98% identity to pva:Pvag_1944)

MetaCyc: 81% identical to putrescine:H+ symporter PlaP (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-69

Predicted SEED Role

"Putrescine importer"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (452 amino acids)

>IAI47_07130 APC family permease (Pantoea sp. MT58)
MSLNTSAAPQRAQLKKTLTLLPVVMMGLAYMQPMTLFDTFGIVSGLTDGHVATAYAFALV
AILFTAVSYGKLVRRFPSAGSAYTYAQKAISPHVGFMVGWSSLLDYLFMPMINILLAKNY
FESLVPGIPSWIFVVLLVGFMTLSNLKGIKTVANFNSVIVVLQVVVMVGITAMVIYGVAS
GVGSGTLVSSRPFWSENAHVVPMITGATILCFSFLGFDGISSLSEETKDAERTIPRAIFL
TALIGGVIFIAASYFLQLYFPDITRFQHPDSSQPEIMLFVAGKALQVGILIFSVVTVLAS
GMAAHAGVSRLMYVMGRDGVFPERFFGYIHPKWRTPSLNVLLVGAIALMAINFDLVTATA
LINFGALVAFTFVNLSVIAQFWVREKRNRTLKDHVQYLLLPLLGALTVGALWVNLEESSM
ELGLIWAAIGIIYLAFVTRSFRNPVPQFSEEV