Protein Info for IAI47_07015 in Pantoea sp. MT58

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 PF00005: ABC_tran" amino acids 53 to 186 (134 residues), 78.7 bits, see alignment E=7e-26 PF14524: Wzt_C" amino acids 307 to 460 (154 residues), 72.5 bits, see alignment E=3.5e-24

Best Hits

Predicted SEED Role

"Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)" in subsystem Rhamnose containing glycans or Teichoic and lipoteichoic acids biosynthesis (EC 3.6.3.40)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.40

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (467 amino acids)

>IAI47_07015 ABC transporter ATP-binding protein (Pantoea sp. MT58)
MSFNESAIIVDNVSKCYQIYDNPRDRLKQFIYPKFRSIFGHASENFYNEFWALKDINFEI
KKGESAGIIGRNGSGKSTLLQIITGTLTPTSGTVSTQGRIAALLELGSGFNPEFTGRENI
YLNGAVLGLTKSDIDNKFDAIAGFADIGTHLEQPVKTYSSGMMVRLAFAVQVQLEPDILI
VDEALAVGDALFQKRCFRQIEKLTSNGVTLLFVSHDQESVRTLTNKSVLLDRGNQIMTGL
SSEVLLEYRRLLHDEENKFYSNLANDIAERTKSDAESTTIVTGNTELQNTDTGNASVTSD
LLRSDKLSFGEGEAVVDGVELFNTQNEVSNVFNPGEKITIRVHFSVYQPTDKLNIGIRIR
NKEGVKIYSWGTLNQDMYKISSGVKDELFWQKKFENGYKGFVDLEFECTLGSNLYEIQAS
VSYEETPDYFSQRILHWRDEAAFFHVHVLRDIYFFGGIADLKMIAKW