Protein Info for IAI47_06975 in Pantoea sp. MT58

Annotation: amylovoran biosynthesis protein AmsF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 738 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF09008: Head_binding" amino acids 48 to 146 (99 residues), 54.9 bits, see alignment E=5.1e-19

Best Hits

Swiss-Prot: 61% identical to AMSF_ERWAM: Amylovoran biosynthesis protein AmsF (amsF) from Erwinia amylovora

KEGG orthology group: None (inferred from 94% identity to pva:Pvag_1977)

Predicted SEED Role

"FIG00635121: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (738 amino acids)

>IAI47_06975 amylovoran biosynthesis protein AmsF (Pantoea sp. MT58)
MKRRDVLQTAASALVGALSVSTFSSYAAKSNGIALKPVDATAIPKGDVPILTPENIYAMP
PQFWQSFEGKLWIGKAGVDASKPGNQIPVFLRDANGKVSEIAQPIALNKGNFTQFIQDNA
ALIADPSHSMTVEDSNGQTLFNIADVSRPGAADFSQRLAQPAGYQLIGEIASVAELRKTR
PLFEGAKVKLKSWHEGREVGGGEFVGSFQPVQNDGGVNFSGEGFSWRRVVDDFNRLTLFD
FGAIADGKTDTAPAIMAMFHWSQQANQQICIQFPAGTFMVSSCNPGDKNLNLFRVSGAMV
NFGYFPATTIVSDGKSAFVFEVNARRVELSNLIFDGNSDKNPNQQGFFNNTCPGGQFFRG
ACLRFNDVGGTAISLQDTLDCKIDQWYASRCSGDVIKSGWSGQKQGNWDHSTAIELSNFN
AQHCRGGKVLNLARCAQSIIHNGWIEHCDNPGDISNGQWIVDALSIEDCKNPLIAHNSRL
NMRQTSLQSGSWIDNSMQGDRLLSIWEMGSTRVESYGVALDGSLKYNYITSRWRLENNTN
QETWFDLGSLYSPTVGDSWEIEIFGQSQFSNGSGDKPLMNLIGDKTTGGRAVIHVQRKKD
RSEASWSAEGSSPIVDVRYVAEHDTDVHLYVKLAGWTPSAAVLVKTTGKDRFVTGRCARV
NAKMEKGNPPSGDATKSAPQRFSLHNGKAGIGANEQGDLLMASRPISADQVDTSKPEGFV
SVVINGKQVALPYFAIKS