Protein Info for IAI47_06915 in Pantoea sp. MT58

Annotation: outer membrane assembly protein AsmA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 607 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF05170: AsmA" amino acids 5 to 247 (243 residues), 51.4 bits, see alignment E=8.4e-18 amino acids 168 to 503 (336 residues), 82.1 bits, see alignment E=4.3e-27 PF13502: AsmA_2" amino acids 351 to 530 (180 residues), 72.9 bits, see alignment E=3e-24

Best Hits

KEGG orthology group: K07289, AsmA protein (inferred from 91% identity to pva:Pvag_1987)

Predicted SEED Role

"A/G-specific adenine glycosylase (EC 3.2.2.-)" in subsystem DNA repair, bacterial (EC 3.2.2.-)

Isozymes

Compare fitness of predicted isozymes for: 3.2.2.-

Use Curated BLAST to search for 3.2.2.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (607 amino acids)

>IAI47_06915 outer membrane assembly protein AsmA (Pantoea sp. MT58)
MKRVITTLAILLVVVVTGLSALVLLVNPNDFRAYMVQQVEQRSGYRLEVSNDLRWHVWPQ
LSILAGRMSLTAPGATQPLVSAENMRLDVDLWPLLSHQLSVSQVLLKNAIVRVTPDSSAQ
PARNAPQGPRDAEPASPSTGWSFDIAKLRVADSLLIWQQPGGDEYNFRDLNITMDQDANK
LATLSLSTTLMRNQRNATLNLKGQLDAAQYPHRLTGQLQQLDYSLSGADIPSQGIKGSLS
LQGEWNGDRQQFSFSGLQLTANDSTLTGQGSGHVLPPQQLALDLKASNLNLDNLLTSAPV
SEAPGAQHATVARSPVIAAPRERTNADSPLNDMDLALKLQANNAVWRGLSLTDLSVNASN
QQGLMTLNTLSGKLGNGSFSIPGSIDIRQPETRVSLKPQLRFIQIQPLLKAFALPESLQG
NLSLDGELSGDTLTVEGAKRSWQGRATISASNLKLAQLNLQQMVQRAVARVSDKVSSEDA
ADEGIESISGQVALNKGVLSFSDLNGNGQNLGLQGAGKVDMVQQQLDVTLGLKISGWRGD
DALVKALSSQPIPLRMYGGWNSLQYSLPVDDVLRNRLQSEARSRLNQWIDRQKEGENKEN
LKKIMRP