Protein Info for IAI47_06895 in Pantoea sp. MT58

Annotation: diguanylate cyclase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1113 transmembrane" amino acids 16 to 39 (24 residues), see Phobius details amino acids 44 to 47 (4 residues), see Phobius details amino acids 67 to 88 (22 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details amino acids 124 to 146 (23 residues), see Phobius details amino acids 158 to 179 (22 residues), see Phobius details amino acids 191 to 210 (20 residues), see Phobius details amino acids 216 to 234 (19 residues), see Phobius details amino acids 240 to 262 (23 residues), see Phobius details amino acids 274 to 291 (18 residues), see Phobius details amino acids 314 to 329 (16 residues), see Phobius details PF05231: MASE1" amino acids 20 to 287 (268 residues), 76.7 bits, see alignment E=7.3e-25 TIGR00229: PAS domain S-box protein" amino acids 303 to 426 (124 residues), 107.6 bits, see alignment E=4.6e-35 amino acids 560 to 684 (125 residues), 40.1 bits, see alignment E=3.7e-14 PF00989: PAS" amino acids 307 to 418 (112 residues), 44.7 bits, see alignment E=4.8e-15 amino acids 564 to 676 (113 residues), 46.3 bits, see alignment E=1.5e-15 PF13426: PAS_9" amino acids 318 to 420 (103 residues), 49.1 bits, see alignment E=2.4e-16 amino acids 570 to 678 (109 residues), 36.8 bits, see alignment E=1.6e-12 PF08447: PAS_3" amino acids 330 to 412 (83 residues), 52.8 bits, see alignment 1.6e-17 amino acids 456 to 540 (85 residues), 45.6 bits, see alignment 2.8e-15 PF08448: PAS_4" amino acids 565 to 680 (116 residues), 33.9 bits, see alignment E=1.3e-11 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 688 to 850 (163 residues), 138.2 bits, see alignment E=2.2e-44 PF00990: GGDEF" amino acids 690 to 846 (157 residues), 145.9 bits, see alignment E=3.9e-46 PF00563: EAL" amino acids 917 to 1096 (180 residues), 59.6 bits, see alignment E=1.3e-19

Best Hits

KEGG orthology group: None (inferred from 92% identity to pva:Pvag_1991)

Predicted SEED Role

"FIG00639031: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1113 amino acids)

>IAI47_06895 diguanylate cyclase (Pantoea sp. MT58)
MTIEILSPQKSTPNCWLSALFLGCIVFVLTLFCLELIVVSGKISPLWFPTTLMTVVVFRC
PSRQLPLLLTACVLGTAAANAIIIGPAFSNIKFALLNLIQAGVGGMLLRALLDRRAPLNS
LHDWARMVLSVGIVTPVLGGLLALWTLQVSGHASFPFFYTWVISEIIGMLVLGPMLLLLP
WPLRRAQFSELGRQLPETLMTLLLTLGASYLSLRFLPWPFTFIVVILFWCAVRLPKLQAF
VLFFINASFISMLLALDAVSVVNNNSALGPVSSWLPFLLVLIPSHIMSLVMDAFRREKLH
ITDSETRFRHAMEYSAIGMALVAPQGKWLQVNRSLCDILGYPAEELKRLTFQQITHPDDL
SLDLQHASRLLEGEIDTYTFEKRYFRKDGEIVWARLTVSLVRDGSQEPLYFIAQIIDISE
LKQSEQVNRRLMERITLANEAGGIGVWEWNLLTGEMLWDKRMYALFGLASHESPSYDLWI
HLLHTADREYAALTVQQAIELRSAFHMEYRVVNAEGQRWVRTQANRLLSKEGRIERMLGI
CQDITPLRNLNEALFQEKERMAITLDSIGEAVISTDKEMRVAFMNPVAEKMSGLSQEQAA
GQPLSELLHITQGRNGPKVENLLLCQLPPEKITPSLAEDLVLHTPDGGHIDIHYSITPLR
SEAGVEQGAVMVIQDVSESRKLMKRLSYSALHDTLTRLPNRASFELQLKRLLFDAAEHQH
QHVLVFIDLDKFKAVNDTAGHAAGDALLRELSDLMQHHLRSSDFLARLGGDEFALLMPDC
DVGQAHDVVQRIVAAVNDYRFQWLGRLYHVGASAGVTQISAENCQSSDVLSQADIACYNA
KRSGRGRLMIYEQHSLPLPGNHQGMDAAMIDALQIELPAWSVAPPKTPQAAFIWLLDVQL
LTADGLLLDETLLRNNLHDETLRRRLDNNILAVFFRHDVEKLNQKGIPVILPLDAGILSD
AAFVEQLCQRFVAAGLSESHCGFAFPAASVLSKGDQLYSALLQLRQCGCRIVLQHFGRNL
DAFTLLSNEVVDYLVLAPELVANVHNNLMDEMLLTIIQGQATQRNIAVLAGPVSVPAVLS
TLATLDVDGVWGSAVAERQSLRALAEDRIFAIR