Protein Info for IAI47_06845 in Pantoea sp. MT58

Annotation: tRNA 5-hydroxyuridine modification protein YegQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 PF01136: Peptidase_U32" amino acids 77 to 343 (267 residues), 285.9 bits, see alignment E=2e-89 PF16325: Peptidase_U32_C" amino acids 359 to 432 (74 residues), 66.3 bits, see alignment E=2.2e-22

Best Hits

Swiss-Prot: 81% identical to YEGQ_ECOLI: Uncharacterized protease YegQ (yegQ) from Escherichia coli (strain K12)

KEGG orthology group: K08303, putative protease [EC: 3.4.-.-] (inferred from 97% identity to pva:Pvag_2002)

Predicted SEED Role

"Putative protease"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.4.-.-

Use Curated BLAST to search for 3.4.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (460 amino acids)

>IAI47_06845 tRNA 5-hydroxyuridine modification protein YegQ (Pantoea sp. MT58)
MMKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFTHENLALGINEAHALGK
KFYVVVNIAPHNAKLKTFIRDLAPVVEMQPDALIMSDPGLIMLVREAFPTMPIHLSVQAN
AVNWATVKFWQQMGLSRVILSRELSLEEIGEIRQQVPEMELEVFVHGALCMAYSGRCLLS
GYMNKRDPNQGTCTNACRWEYKVQEGQQDEVGNIVGIHTPVAVQDVTPVLGIGQPTDKVF
LLEEKMKPGDVMSAFEDEHGTYIMNSRDLRAVAHVERLSEMGVHSLKIEGRTKSYYYCAR
TAQVYRRAIDDAAAGKPFDPSLLLTLEGLAHRGYTEGFLRRHTHDSYQNYQQGFSVSDRQ
QFVGEFTGERRGEWAEVAVKNKFMLHDSVEIMTPEGNLNCQLDALQNARGEPTEVAPGDG
HRVWLQVPQEVDLRFALLLRNFDHGEDTRDPHNRLPTETF