Protein Info for IAI47_06725 in Pantoea sp. MT58

Annotation: DUF418 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 49 to 72 (24 residues), see Phobius details amino acids 84 to 101 (18 residues), see Phobius details amino acids 107 to 123 (17 residues), see Phobius details amino acids 134 to 153 (20 residues), see Phobius details amino acids 201 to 222 (22 residues), see Phobius details amino acids 234 to 255 (22 residues), see Phobius details amino acids 273 to 291 (19 residues), see Phobius details amino acids 310 to 331 (22 residues), see Phobius details amino acids 338 to 360 (23 residues), see Phobius details PF04235: DUF418" amino acids 216 to 373 (158 residues), 135.1 bits, see alignment E=1.2e-43

Best Hits

Swiss-Prot: 61% identical to YEIB_ECOLI: Uncharacterized protein YeiB (yeiB) from Escherichia coli (strain K12)

KEGG orthology group: K07148, uncharacterized protein (inferred from 94% identity to pva:Pvag_2028)

Predicted SEED Role

"FIG00924762: possible membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (386 amino acids)

>IAI47_06725 DUF418 family protein (Pantoea sp. MT58)
MQRYHALDFIRGCAILGILLLNIVGFGLPSAAYLNPAWQGSVTLSDAWTWALSDVFAQLK
FLTLFALLFGAGLQMQLPRGSRWLTARLSLLVLIGFVHGVFLWEGDILLDYGIIGLVVWR
VLRDVPSTRSLMNTGILLYLVGCGVLLVFGSISSPEPTNSWLPGAAELQYEQFWKLAGGW
DAIQNRLDHLSSGLMALAAQYGWQLAGLMMIGGALLRSGWLIGEFPARHYRQAAALLLII
GFSIAVAGVAAQWLLHWEFRWTAFYLQAPRDLASPLISLGYTALCLAYWPQIARWRISYA
IQCVGRMALTNYLLQTVICTTLFYRFGFYMHFTRLELVLMVPAVWLINILFSLIWLHFFA
QGPLEWLWRRFTLLSAGKSRITDNAG