Protein Info for IAI47_06695 in Pantoea sp. MT58
Annotation: ABC transporter ATP-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 33% identical to BTUD_VIBCM: Vitamin B12 import ATP-binding protein BtuD (btuD) from Vibrio cholerae serotype O1 (strain M66-2)
KEGG orthology group: K02013, iron complex transport system ATP-binding protein [EC: 3.6.3.34] (inferred from 99% identity to pva:Pvag_2034)Predicted SEED Role
"Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)" in subsystem Iron acquisition in Vibrio (TC 3.A.1.14.3)
Isozymes
Compare fitness of predicted isozymes for: 3.6.3.34
Use Curated BLAST to search for 3.6.3.34
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (262 amino acids)
>IAI47_06695 ABC transporter ATP-binding protein (Pantoea sp. MT58) METGLTLRGFSAGYPKHKVIENLNVAPLPRGEITVLLGPNGCGKSTLLRALAGLNKGQGE MWLNGEDLMTQPFARRAKNVVYLPQSLPAGVHLHVLESIIVAQRASGGLHSASSEAEIMH LLEQLGIAHLAMRYLDQLSGGQKQLVGLAQSLIRRPKLLLLDEPLSALDLNYQFHVMDLV RRETAQRNIVTVVVVHDINIALRHAQHALMLKQGALVAEGQPDKVITPATLAKVYGVNGR IEHCSRGIPQVMIDGLTGPALV