Protein Info for IAI47_06250 in Pantoea sp. MT58

Annotation: DedA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 transmembrane" amino acids 27 to 49 (23 residues), see Phobius details amino acids 69 to 92 (24 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 190 to 208 (19 residues), see Phobius details PF09335: SNARE_assoc" amino acids 49 to 177 (129 residues), 81.6 bits, see alignment E=3.4e-27

Best Hits

Swiss-Prot: 83% identical to DEDA_ECOLI: Protein DedA (dedA) from Escherichia coli (strain K12)

KEGG orthology group: K03975, membrane-associated protein (inferred from 99% identity to pva:Pvag_2127)

Predicted SEED Role

"DedA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (220 amino acids)

>IAI47_06250 DedA family protein (Pantoea sp. MT58)
MEFIHFLVDFILHIDVHLAELVAQYGIWIYAILFLILFCETGLVVTPFLPGDSLLFVAGA
LAALPGNDLNVHIMVALLVVAAVLGDAVNYTIGRLFGERLFSNPNSKIFRRSHLDKTHAF
YARHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFALFNVTGALLWVLLFSYAGYLFGD
LPVVQENLKLLIVGIILVSILPGVIEVWRHRRQAKQQKLP