Protein Info for IAI47_06115 in Pantoea sp. MT58

Annotation: long-chain fatty acid transporter FadL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF03349: Toluene_X" amino acids 16 to 427 (412 residues), 485 bits, see alignment E=8.2e-150

Best Hits

Swiss-Prot: 68% identical to FADL_ECOL6: Long-chain fatty acid transport protein (fadL) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K06076, long-chain fatty acid transport protein (inferred from 96% identity to pva:Pvag_2151)

Predicted SEED Role

"Long-chain fatty acid transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (427 amino acids)

>IAI47_06115 long-chain fatty acid transporter FadL (Pantoea sp. MT58)
MNHKNLFAKSAVAAAVALVSSHVYAAGFQLNEFSTIGLGRAYSGEGAMGDTAASASRNPA
TMALMDRPEFSLGAVYIAPDVNISGRSPSGRSLDANNIAPNQWIPNIHYVQPINDQWWIG
ASATSNYGLATEFNNGYTAGGYGGKTDLMTGNFNLSTAYRLNDHFSVGVGFDAVYAKAKI
ERYAGESGARLGIPADTQVAHLKGDKWGYGWNAGVLYEVDENNRFGFTYRSEVKIDFDGD
YKSNLSSRLNAFNDPTVTGVPDGTNGTTVPGALTLNLPEMWEVSGWHKVAPQWAVHYSLA
YTSWSQFQELKATGSNGQTLFYKDESFHDAYRIALGTTYSYDKNWTFRTGIAFDDSPVPA
DKRSISIPDQDRLWLSAGTSYAFNDNASVDLGISYMHGQKVTVKEGPYTFTSEGKAWLYG
ANFNYKF