Protein Info for IAI47_05980 in Pantoea sp. MT58

Annotation: transglycosylase SLT domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 682 transmembrane" amino acids 301 to 305 (5 residues), see Phobius details amino acids 308 to 328 (21 residues), see Phobius details PF01464: SLT" amino acids 520 to 616 (97 residues), 85.5 bits, see alignment E=1e-28

Best Hits

Predicted SEED Role

"FIG01221322: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (682 amino acids)

>IAI47_05980 transglycosylase SLT domain-containing protein (Pantoea sp. MT58)
MNAETIKDFLVSLGFQIDDAGARKFDSVVLGTTLQVVKLGAVVEATALSVVAFTAKIASG
LDNLYWMSQRTGATVAGIQQIGYAVSQLGGTVDGARSSLEGLAHFVRNNPGAEGFLNRLG
VQTRDAKGNMRDMASVFTGVGQRLSQMPYYRANQYAQMLGIDENTLMAMRRGVGQFSAQF
TQMAKAIGYNADAAAVSSNRFMTSLRAFGQMAGMARDKIGSSLAEGLSGSIDTLRKQIVD
NFPKIEQTIISGVKGLLWLAETIGRVVYRLIQAGADIMSWWSSLDKSTQRLIEIFGGLVI
AWRILNSAFLMSPIGIITALGLAILALYDDYKTWREGGKSLIDWSKWEPQIKGAIKGIDN
LKDAVMRLLGIDPQTWTSKWDMSNLMDNLGELSKMLDGIARLLNAIKDGRWKDAYSIGRE
LVNQGKDNPDALPAVTSSADSAAEYIKSKTGFDPRSVGLALKRWLTDSEPQPMPAEEPGP
EKIYPVDGPISQYGQSVRRPQASRDGAALLGWMKPAMDRLEQLYRLPEGLLKSVAIAESS
GNPNALSGAGAQGLFQIMPGTGRDLGLRGNDAFDPMKAAAAAAKYLSQLLKANNGDLSKA
LASYNWGLGNVQKHGMALMPQETRNYVPRVLSNMPNAGASITQETNIHIHGVSDPERAGM
SVADRQMGVNSRLTQQLTPAVR