Protein Info for IAI47_05960 in Pantoea sp. MT58

Annotation: DUF3383 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 381 PF11863: DUF3383" amino acids 7 to 100 (94 residues), 73.4 bits, see alignment E=9.5e-25 amino acids 97 to 379 (283 residues), 273 bits, see alignment E=2.8e-85

Best Hits

KEGG orthology group: None (inferred from 78% identity to pva:Pvag_1699)

Predicted SEED Role

"Phage-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (381 amino acids)

>IAI47_05960 DUF3383 family protein (Pantoea sp. MT58)
MAQGLPVSNVVNVDVIMSPTAATGRNFGSLLILGTSTVIPVSERIRLYTSSEDIGVDFGE
DSTEYEAALIYFSQSPRPSQVYVGRWAKTLATGETGSVETLAQAISAVLQFTNWYGLGIA
DEDELTPAEITATAAAIQASSLSRVFAVTSSDSGIIDSASTSDVASTLKAAGYSRTFVQY
STKSKYAALSAFGRAFTVNFTGNNTTITLKFKTEPGVTYETLTSSQAAAVDAKNANVYVY
YANDTAILQQGVMSNGDFFDERHGLDWLQNYVQTNLFNLLYTSTSKIPQTEAGITRLLTN
VEMSLDQAVSNGLVAPGVWNGGDIGQITSGDTLTKGYYVYAQPLSSQAQSDREKRRAPLI
QAAIKLAGAVHYADVQINVVR