Protein Info for IAI47_05910 in Pantoea sp. MT58

Annotation: DUF1073 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 490 TIGR01555: phage-associated protein, HI1409 family" amino acids 16 to 423 (408 residues), 230.9 bits, see alignment E=1.3e-72 PF06381: Abc1-like" amino acids 49 to 400 (352 residues), 352.5 bits, see alignment E=1.1e-109

Best Hits

KEGG orthology group: K09961, hypothetical protein (inferred from 58% identity to sty:STY1048)

Predicted SEED Role

"Phage protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (490 amino acids)

>IAI47_05910 DUF1073 domain-containing protein (Pantoea sp. MT58)
MSETESMSQPVPTRDSYENFIARLGVNESNQSGAGTYRNNWTSRNRLLIEQAYRTSWLVG
AGVDAIPDDMTRKGVTITSKLEDGRKKQLDHAWDEMGLWEAINDTLKWARLYGGAVGVIL
IDGQNYSTPLRVEAIAKDSFKGVMVMDRWMLNAMTERRVSELGPDFGMPEFYKVVTSATG
IPPWRIHHSRLIRFDGIPLPYQQRLTENDWGMSVIERCFDRLLAFDSTTTGVAQLVYKAH
LRTYSIEGLRKLLAMGKDSPMFKGLMSHMDMIREYQSNEGMTIMDAADKFEAHTYSYAGL
SDVLAQFGQQVSGAFGIPLVRLFGQSPAGFSTGDTDLANYYDNVSTQQERKLRRPIRKLF
QVLHMSLFATPLPDDFTFEFNELWQTPDSERADTATKVVAATVQAVDAGLMTEKAGAMHL
QETARVTGLGSTISDEDIDNASDLPPPSEKDLDNVEATEPEARREATGNTATTDSAGSGR
DSRGFLRWFK