Protein Info for IAI47_05880 in Pantoea sp. MT58

Annotation: lysis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF03245: Phage_lysis" amino acids 32 to 154 (123 residues), 142.1 bits, see alignment E=5.6e-46

Best Hits

Swiss-Prot: 54% identical to RZPD_ECOLI: Prophage Rz endopeptidase RzpD (rzpD) from Escherichia coli (strain K12)

KEGG orthology group: K14744, putative Rz endopeptidase from lambdoid prophage DLP12 [EC: 3.4.-.-] (inferred from 61% identity to enc:ECL_03571)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.4.-.-

Use Curated BLAST to search for 3.4.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (156 amino acids)

>IAI47_05880 lysis protein (Pantoea sp. MT58)
MTLKAKVLAAFIVLVLLLLVISVAFALYYRGNAIDYKTQRDTASSSLKVANDTINDMQTR
QRDVAALDEKYTKELANAKATIDQLHDDVVTGKRRLQLNATCAKQSASGTASVDDAASAR
LTDTAQRDYFTLRERIEIAGKQIAGLQQYIYEQCLK