Protein Info for IAI47_05540 in Pantoea sp. MT58

Annotation: DUF2502 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 139 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF10697: DUF2502" amino acids 28 to 99 (72 residues), 30.8 bits, see alignment E=1.4e-11

Best Hits

KEGG orthology group: None (inferred from 84% identity to pva:Pvag_2182)

Predicted SEED Role

"FIG00639029: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (139 amino acids)

>IAI47_05540 DUF2502 domain-containing protein (Pantoea sp. MT58)
MKRALFFAALLALFSPLACHTAEASSASISLAPGVTLNLGDRDNRGNYWDGGRWREPRWW
NDRYTYNERRWWRHEEWRRQQQWERERRWQERDRERRWDHQYRRDRDWDHHDRRGPGPGP
RGFGPHGPGGPGPHGHDRH