Protein Info for IAI47_05415 in Pantoea sp. MT58

Annotation: HAMP domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 transmembrane" amino acids 10 to 32 (23 residues), see Phobius details amino acids 152 to 172 (21 residues), see Phobius details PF00672: HAMP" amino acids 167 to 221 (55 residues), 40 bits, see alignment 6.1e-14 PF00512: HisKA" amino acids 226 to 288 (63 residues), 52.8 bits, see alignment E=5e-18 PF02518: HATPase_c" amino acids 336 to 443 (108 residues), 81.8 bits, see alignment E=7.6e-27

Best Hits

KEGG orthology group: None (inferred from 92% identity to pva:Pvag_2206)

Predicted SEED Role

"Putative two-component system sensor kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (446 amino acids)

>IAI47_05415 HAMP domain-containing protein (Pantoea sp. MT58)
MKQSYRGRMFWKIFIGFWIVFVIMSQLIWLGFTLSGKRHEPPEIVAIRRIVDLQMTSAAS
VLARSGPDALNAMLSDWDNSDRQFFHVTQQAKSPQSQNSGNLDYVGRLPEEVVRWVQGAD
GKDYQLRYDLDGMRKDSMHNLMPRKFLNIPEPIFIFAGSVGLLFSLLLAWNLTRPMRQLC
EGFSRVAEGDLRVRLFPIMRKRHDEISNVAEAFDAMVERLDTLVRAREELLHDISHELRS
PLARLQLATGLARQTPESVNSSLDRIDEEARRLDKMIGELLTLSRAEHESIPDEQYFDLT
GLLEAVLTDVRYEAQIPGVQVELHVDAEADYTVRGNAELIRRGVENVLRNALRFSLPGQR
IEVHLRAEAQWLAIQVCDQGPGVDEDKLSSIFDPFVRVNSPLMGKGYGLGLAIVRKVVLA
HHGEVDARNRPEGGLELTLRLPHWQP