Protein Info for IAI47_05230 in Pantoea sp. MT58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 26 to 46 (21 residues), see Phobius details amino acids 81 to 102 (22 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 155 to 180 (26 residues), see Phobius details amino acids 216 to 238 (23 residues), see Phobius details amino acids 257 to 280 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 97 to 283 (187 residues), 59.5 bits, see alignment E=1.8e-20

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 95% identity to pva:Pvag_2243)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (291 amino acids)

>IAI47_05230 ABC transporter permease (Pantoea sp. MT58)
MSLSDINSLTTGGPLRHRLRPLGANWQWMLLPALLFFAAFWLLPFARLLQIGMTEDRTTH
HSGYWTVISQQQYLQSLLNTVLLSAAVTLVTLLIAAVVGCFLARQRFTGRGTLLALLTFP
LAFPGVVVGFLMVMLAGRQGVLAQLSLSLFHERWVFAYSLSGLFVGYLYFSLPRAIVTLV
AASEKLDRSLEEAARSLGASQWRIIIDIIIPGLKPALLSCGALCFATSMGAFGTAFTLGT
ELAVLPLTIYGEFTNYANFATAAALSVVMGAVAWLALMLANGLARRKEHES