Protein Info for IAI47_05065 in Pantoea sp. MT58

Annotation: YfgM family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 transmembrane" amino acids 24 to 42 (19 residues), see Phobius details PF09976: TPR_21" amino acids 15 to 204 (190 residues), 166.4 bits, see alignment E=6.5e-53 PF14559: TPR_19" amino acids 99 to 151 (53 residues), 26.9 bits, see alignment E=4.9e-10

Best Hits

Swiss-Prot: 64% identical to YFGM_ECOLI: UPF0070 protein YfgM (yfgM) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to pva:Pvag_2277)

Predicted SEED Role

"Mlr7403 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>IAI47_05065 YfgM family protein (Pantoea sp. MT58)
MEVYSNENEQTDALRNFFANNGKALAIGVVIGIAALGGWRYWSSHQDDTAKSVSAQYQQL
TSAMQAGKPETLEAVNRFASENSNTYGALAAMDLAKQYVDAGQLDKAASLLQNGLKDTKD
ANLQAVINLRLARIQLQQNQADAALKTLDGVKGDGWTAIVADIRGEALLTKGDKQGARDA
WSKGVESDASPALKQMMQMKMNNLS