Protein Info for IAI47_04985 in Pantoea sp. MT58

Annotation: TIGR04086 family membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 transmembrane" amino acids 30 to 53 (24 residues), see Phobius details amino acids 73 to 93 (21 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 302 to 322 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 98% identity to pva:Pvag_2293)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>IAI47_04985 TIGR04086 family membrane protein (Pantoea sp. MT58)
MADTRINNGYTETLATGPAGLPLKRISWSAVFAGVICALIVHIILTLLGTAIGATTIDPM
KEQNPLDGLGTGALVWTAIEMLVAMAAGSYVAGRLAQREGALHGLLMFGLSTIFTIYLAI
ALATSVLGGAMNIVGSGFQALGSGISAAAPSVTQMAKQKLQENNINLDNLQNELETTLRQ
TGKPELQPENLKQDANKEAQNAENQASNTANHPQTADTDLTNWVKGVMDRHSDTLQAADR
DALKNIIKARTGKSDQEVDQIVAKTEQNYQQAVQKYQELKQQAEQKAREAGEKAAAATAK
ASWYALILLIIEAVLAGVMGMVGRRTQPRQVLAHERR