Protein Info for IAI47_04970 in Pantoea sp. MT58

Annotation: stationary phase inducible protein CsiE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF00874: PRD" amino acids 236 to 325 (90 residues), 54.5 bits, see alignment E=5.9e-19

Best Hits

Swiss-Prot: 45% identical to CSIE_ECOLI: Stationary phase-inducible protein CsiE (csiE) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 93% identity to pva:Pvag_2296)

Predicted SEED Role

"Stationary phase inducible protein CsiE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (422 amino acids)

>IAI47_04970 stationary phase inducible protein CsiE (Pantoea sp. MT58)
MSSATPLAPLFSRSQRQCHLLLLLFLPTPLLTLEKVCQLNGVDPDVARQDIADVGHEIQR
YHQLELHQMVDGSFRLHGTELDRRLCLLHNLRRSLRLSQDFVCEHFAAPLRQRLKVMKIE
KALWDETNLQALIQHCSLRLKRDFSERDRLFLQIFMKYGLCQRQPVLFSEAQCLWLQQKP
ERQAAEDVIYHWRKRCHIAPPVSEADFWTLLFSQIHTPVVDAIAHPAEQQLMKATQQLID
DFEACAGITFADRNELLHQLYPHLAQALDRTHFNIGIDNSVALDVSRLYPRLLRTTQQAL
QAFEQHYRIAFTPEEVSLITIIFGAWLMQESALQEKQVLILTGDDADLEQDVEQQIREIT
LLPINITYQDVKLFQREGAPRDVDIIISPYPTSLPLYSPPLVHAELPLTLHHQQRIRYLL
ES