Protein Info for IAI47_04755 in Pantoea sp. MT58

Annotation: AlpA family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 85 PF05930: Phage_AlpA" amino acids 23 to 73 (51 residues), 75.7 bits, see alignment E=1e-25

Best Hits

Swiss-Prot: 56% identical to Y9K_BPP4: Uncharacterized protein ORF88 from Enterobacteria phage P4

KEGG orthology group: K07733, prophage regulatory protein (inferred from 65% identity to pam:PANA_2916)

Predicted SEED Role

"Phage DNA-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (85 amino acids)

>IAI47_04755 AlpA family transcriptional regulator (Pantoea sp. MT58)
MHAASPVPAPAIPVIRDAIYPRDRFMRLPEVISTCGLSRSTIYDLISREQFPSQISLGGK
NVAWLASEIDGWMQARIAQRAGGTA