Protein Info for IAI47_04590 in Pantoea sp. MT58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 87 to 111 (25 residues), see Phobius details amino acids 132 to 155 (24 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 208 to 230 (23 residues), see Phobius details amino acids 251 to 271 (21 residues), see Phobius details PF12911: OppC_N" amino acids 25 to 60 (36 residues), 30.7 bits, see alignment 2.3e-11 PF00528: BPD_transp_1" amino acids 101 to 282 (182 residues), 119.5 bits, see alignment E=1.5e-38

Best Hits

Swiss-Prot: 45% identical to DDPC_ECOLI: Probable D,D-dipeptide transport system permease protein DdpC (ddpC) from Escherichia coli (strain K12)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 98% identity to pva:Pvag_2348)

MetaCyc: 44% identical to dipeptide ABC transporter membrane subunit DppC (Escherichia coli K-12 substr. MG1655)
ABC-8-RXN [EC: 7.4.2.9]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (285 amino acids)

>IAI47_04590 ABC transporter permease (Pantoea sp. MT58)
MTQQLSEPETLRPRRRRQRVTSLTVGLTLVAILILMALLAPLIAPFDPNVQTMSSRLLAP
SAQHWFGTDGFGRDLLSRVIYGTRPTLLLVSLILVLTIPAGLLIGITAGYVGGWTERLLM
RITDIFLSLPNLVIALALVAILGPGLMNGALALALTSWPPFARQARAETLALRRSDYLAA
ARMQGITGFRLMFGHILPLCMPTAVVRAALSLGGIILAAAGLGFLGMGVQPPTAEWGSMV
AEGSKVIFDQWWVAAAPGAAILFASLAFNLTGDGLRDRLDTRHAK