Protein Info for IAI47_03710 in Pantoea sp. MT58

Annotation: oxidative stress defense protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF04402: SIMPL" amino acids 32 to 233 (202 residues), 179.5 bits, see alignment E=5.3e-57

Best Hits

Swiss-Prot: 68% identical to YGGE_ECOLI: Uncharacterized protein YggE (yggE) from Escherichia coli (strain K12)

KEGG orthology group: K09807, hypothetical protein (inferred from 99% identity to pva:Pvag_2541)

Predicted SEED Role

"Protein of unknown function DUF541"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (241 amino acids)

>IAI47_03710 oxidative stress defense protein (Pantoea sp. MT58)
MKLKALALAAIMSAGALPGVHADELPNGPHVVTSGKATVDARPDIATLSIVVNVSSKDAA
DAKKQADSRVAQYFDFLQKNGIEKKDIDAANLSTQPEYDYTKEGKSVLKGYRAVRQVQVT
LRQLDKLNDLLDGALKSGLNEVRSVELGVANPESYKEQARKAAIKNATQQASQLAEGFNA
KLGSIYSIRYQVANYQPMPMNRMYKAAAAADTSAQETYDQQSINFDDQVDVVFEIKPNAA
Q