Protein Info for IAI47_03325 in Pantoea sp. MT58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 transmembrane" amino acids 18 to 36 (19 residues), see Phobius details amino acids 76 to 98 (23 residues), see Phobius details amino acids 159 to 182 (24 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details PF07670: Gate" amino acids 81 to 160 (80 residues), 31.4 bits, see alignment E=1.1e-11

Best Hits

Swiss-Prot: 46% identical to YJIH_ECOLI: Uncharacterized protein YjiH (yjiH) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 96% identity to pva:Pvag_2612)

Predicted SEED Role

"FIG00732383: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (222 amino acids)

>IAI47_03325 hypothetical protein (Pantoea sp. MT58)
MSDESVVNPVKITATKGSYVSLIFAILFFSGLFYHVEGLSWLGAFDFTTLGGSFGTMKDP
ASNTFLGAGGLSAKAGFLFALSLTPTVMLALGVLEIFTHYGAIRAAHRLLTPLLKPLMGL
PGHCGLALITDLQSTDAGAALTKEMADQKQISKKEVVVMSAWQYSGAGLINNYFAIGSAL
FASMTLPIIIPLLLMFVLKFVGAAITRAVLNSVYKKDFADGK