Protein Info for IAI47_03310 in Pantoea sp. MT58

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 61 to 84 (24 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 114 to 114 (1 residues), see Phobius details amino acids 116 to 133 (18 residues), see Phobius details amino acids 150 to 171 (22 residues), see Phobius details amino acids 178 to 199 (22 residues), see Phobius details amino acids 243 to 267 (25 residues), see Phobius details amino acids 280 to 301 (22 residues), see Phobius details amino acids 313 to 335 (23 residues), see Phobius details amino acids 341 to 365 (25 residues), see Phobius details amino acids 381 to 400 (20 residues), see Phobius details amino acids 407 to 427 (21 residues), see Phobius details PF07690: MFS_1" amino acids 31 to 390 (360 residues), 195.1 bits, see alignment E=1.7e-61 PF00083: Sugar_tr" amino acids 57 to 202 (146 residues), 23.5 bits, see alignment E=2.5e-09

Best Hits

KEGG orthology group: K08191, MFS transporter, ACS family, hexuronate transporter (inferred from 98% identity to pva:Pvag_2615)

Predicted SEED Role

"Hexuronate transporter" in subsystem Alginate metabolism or D-Galacturonate and D-Glucuronate Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (436 amino acids)

>IAI47_03310 MFS transporter (Pantoea sp. MT58)
MSLESTTKPISASRTVRVIKNLRWWMLGMFLLGVTVNYITRNSLGILAPELKNSLHMSTE
QYSWVVAAFQLAYTLFQPVCGWLIDVIGLKMGFLICALIWSVTCLLHAGAGSWLHLALLR
FVMGASEAAATPANAKAIGDWFPKKERPVAAGWAGVGFSIGAMLAPPIIYVAHITFGWQG
AFLLTGGLGLLWVGLWWWGYHSPESHPRLSDEERAFINQDNEAIGEKLPFFTALKVIGKE
KKFYGIAIPAFLAEPAWAVLSFWVPLYLANERGMDLKQIVMFAWLPFLAADLGSVASGYL
TKIYVRWFGMTRVNSIVASSVTGALLMVSLALMTLVKDPWLAIALISVGGFGHQVISCML
SALVVERFDRRQMATVNGMRGSCAWIASFIFSLIIGVTADTIGFNPLFVAMGFFDLIGAV
FLVMLIAERRQRPANP