Protein Info for IAI47_03205 in Pantoea sp. MT58

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 transmembrane" amino acids 167 to 185 (19 residues), see Phobius details PF06719: AraC_N" amino acids 27 to 178 (152 residues), 143 bits, see alignment E=8.1e-46 PF00165: HTH_AraC" amino acids 200 to 241 (42 residues), 37.4 bits, see alignment 3.1e-13 amino acids 263 to 288 (26 residues), 30.9 bits, see alignment (E = 3.4e-11) PF12833: HTH_18" amino acids 213 to 288 (76 residues), 82.9 bits, see alignment E=2.4e-27

Best Hits

Swiss-Prot: 69% identical to YQHC_ECOLI: Uncharacterized HTH-type transcriptional regulator YqhC (yqhC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to pva:Pvag_2636)

Predicted SEED Role

"Hypothetical transcriptional regulator YqhC" in subsystem D-gluconate and ketogluconates metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>IAI47_03205 AraC family transcriptional regulator (Pantoea sp. MT58)
MAHDALCHRLAQQVVTLMTHGHDRLCPVENVSLIYANQYRPRTPMMYQPGIVILFQGSKT
GYLGSTVFQYDASKYLMLTVPLPVECETWASPEIPIAGLCLNVDTASLQDLLIEIGDDDQ
FQPQPQTSGIHSAWLTEPMLCAAERLLDVMTQPRDARVLGPHIVREIIYYVLTGPIGGAL
LSLVSRQTQFSLIARALRRIENHYAENLSVDALAAEVNMSVSAFHHNFKAVTQTSPLQYL
KRYRLHQARLLMLHDGLKASAAAVRVGYESPSQFSREFKRYFGVTPGEEVNRVRQTVTDS
SL