Protein Info for IAI47_03145 in Pantoea sp. MT58

Annotation: DUF1249 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 PF06853: DUF1249" amino acids 22 to 135 (114 residues), 142.1 bits, see alignment E=3.8e-46

Best Hits

Swiss-Prot: 86% identical to YQIB_ECOL6: Uncharacterized protein YqiB (yqiB) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K09920, hypothetical protein (inferred from 100% identity to pva:Pvag_2648)

Predicted SEED Role

"FIG074102: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (141 amino acids)

>IAI47_03145 DUF1249 family protein (Pantoea sp. MT58)
MKQRYTPDFPEMMRLCETNFAQLRRLLPRNDEAGESVIYQVSGARYQLTIQESTRYTTLV
EIRQVAPAVSYWSLPSMSVRLYHDAMVAEVCSTQQIYRFKARYDYPNKKLHQRDEKHQIN
QFLADWLRYCLAHGAMAVPVC