Protein Info for IAI47_02995 in Pantoea sp. MT58

Annotation: tyrosine-type recombinase/integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 PF00589: Phage_integrase" amino acids 173 to 243 (71 residues), 35 bits, see alignment E=6.2e-13 amino acids 260 to 321 (62 residues), 46.6 bits, see alignment E=1.7e-16

Best Hits

Swiss-Prot: 58% identical to VINT_BP186: Integrase (int) from Escherichia phage 186

KEGG orthology group: None (inferred from 90% identity to pao:Pat9b_3451)

Predicted SEED Role

"putative prophage integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (338 amino acids)

>IAI47_02995 tyrosine-type recombinase/integrase (Pantoea sp. MT58)
MAIGKLPTGEWQTQVFPNGRDDKRIRRQFATKGEAQSFKKFVKDQRQDKPWLGEKTDKRR
IIELVELWFNTHGITLADGEKRRTTMAFACEAMGNPLATEFNAKIFASYREQRLSGKITR
SSRVKTVTPRTVNLELAYFRAMFNELRRLDEWTAANPLENVREFKISESEMAYLTIEEIR
TLLAECENSRSKDLTTIVKICLATGARWSEAEGLKGNQIRAGQIIYVKTKGKKNRAVPIT
EKLHSDLPSSRKAELLFKPCYSAFRKAMQRAGIETPAGQLTHVLRHTFASHFMMNGGNIL
VLQRILGHTDIKVTMRYSHFAPDHLSEAMLLNPLSRIE